Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., RNA polymerase-associated protein RapA from Erwinia tracheiphila SCR3

 Score = 1199 bits (3103), Expect = 0.0
 Identities = 575/969 (59%), Positives = 762/969 (78%), Gaps = 3/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F LGQRWISDTES+LGLGTVVA+D R VTL+F A+ ENR+YA++D+P+TRVIFN GD 
Sbjct: 1   MPFTLGQRWISDTESELGLGTVVAIDTRMVTLLFPATGENRLYAKNDSPITRVIFNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           + S +GW ++V  V +D G+ TY GTR+DT+E+ + +RE+ L +++ F+KPQD+LFAGQ+
Sbjct: 61  ITSHEGWQMEVTDVNDDNGLMTYTGTRLDTDETDMLMREVMLDSKLVFSKPQDRLFAGQL 120

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DRMD F LR+RA   Q +Q+     GL GMR  LIPHQL+IAH+VGRR+APRVLLADEVG
Sbjct: 121 DRMDRFALRFRARKYQSEQYHLATSGLRGMRTSLIPHQLHIAHDVGRRYAPRVLLADEVG 180

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAGMI+HQQ+L GRAERILI+VPETLQHQWLVEM+RRFNL F++FD++R  +A  
Sbjct: 181 LGKTIEAGMILHQQLLAGRAERILIIVPETLQHQWLVEMLRRFNLRFALFDDDRYSQAQL 240

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           ++DN F+T+Q V+CSLDF+R+++QR E+  EAEWDL++VDEAHHL W   +PSREYQVIE
Sbjct: 241 DSDNAFDTEQLVICSLDFVRRNKQRLEKLAEAEWDLMIVDEAHHLAWEEGQPSREYQVIE 300

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
            LA+Q PGVLLLTATPEQLG ESHFARLRLLD +RF+D+ AFV+E++ + P+ADAV++L 
Sbjct: 301 QLAKQIPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAAFVEEQQHFRPIADAVSSLL 360

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF 420
           +   LS +  N + EL+ EQD+EPL +   ++   D    ARQELI  LMDRHGT RVLF
Sbjct: 361 ADNALSQQQMNGLNELVGEQDIEPLLQV--ANGEGDNKLAARQELIAMLMDRHGTSRVLF 418

Query: 421 RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE 480
           RNTR  +KGFP R +H + L +P+QY T+M+V+G++  + + + RA  MLYPE+I+QEFE
Sbjct: 419 RNTRNGVKGFPERELHQIRLPLPTQYQTAMKVSGIMAARKSADERARDMLYPEQIYQEFE 478

Query: 481 GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM 540
           G+ S+WW FD RV WL+  + + R  K+LVI ++A+TALQLEQ LREREGIRA VFHEG+
Sbjct: 479 GDSSTWWNFDPRVEWLMGFLTSHRQHKVLVICAKANTALQLEQVLREREGIRAAVFHEGL 538

Query: 541 SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD 600
           SIIERD+AAA+FA EE GAQVL+CSEIGSEGRNFQFA+Q+VMFDLP NPDLLEQRIGRLD
Sbjct: 539 SIIERDRAAAWFASEEDGAQVLLCSEIGSEGRNFQFASQMVMFDLPGNPDLLEQRIGRLD 598

Query: 601 RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYD-AFAERLIPILAAG 659
           RIGQ  DI ++VPYL +T+QA+L RW+ EGL+AF  TCPTGR VYD A+++ ++ + A  
Sbjct: 599 RIGQAHDIQIHVPYLEKTAQAVLIRWYHEGLDAFEHTCPTGRTVYDKAYSQLIVYLAAPD 658

Query: 660 GGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             E L++ I E  + ++ LKSQLE GRDRLLE++SNGGEKA  +AEQIA  D +  LV F
Sbjct: 659 NNEGLDLFISECRQQHEALKSQLEQGRDRLLELNSNGGEKALALAEQIATQDNNIELVNF 718

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
           AL+LFD IG++QEDR +N +V+TP +HM+VP +PGLP +G TITFDR+ ALSRED  +++
Sbjct: 719 ALNLFDIIGINQEDRSDNLIVLTPGDHMLVPDFPGLPEDGCTITFDRNQALSREDAQYVT 778

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
           WEHP+++ G+DL++S   G+C +SLLKNKALP+GT+L+E +YVV+ QAPK   ++RFLP 
Sbjct: 779 WEHPIIRNGLDLILSGNTGSCTLSLLKNKALPIGTLLVEQIYVVETQAPKHLQLTRFLPP 838

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +P+R+L+D +G +L+ +VEFE+FNRQL+ VNRH  SKLV++VQ DVH ++  +E      
Sbjct: 839 TPMRMLVDRKGTNLAEKVEFENFNRQLTAVNRHTGSKLVNAVQQDVHAILQLTEDQAAEE 898

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
              + + A+      L++EL RL AL+AVNPNIR +EI+ L+   +++   + +A ++LD
Sbjct: 899 ARKLIDAAREQANDKLSAELSRLEALRAVNPNIRQDEIDALESNREQVLAALNEASWRLD 958

Query: 960 SLRLIVVAH 968
           +LRLIVV H
Sbjct: 959 ALRLIVVTH 967