Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 968 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Enterobacter asburiae PDN3

 Score = 1243 bits (3217), Expect = 0.0
 Identities = 600/969 (61%), Positives = 770/969 (79%), Gaps = 3/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F LGQRWISDTES+LGLGTVVA+D R VTL+F A+ ENR+YAR+D+PVTRV+FN GD 
Sbjct: 1   MPFTLGQRWISDTESELGLGTVVAIDTRMVTLLFPATGENRLYARNDSPVTRVMFNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           V S  GW L++E V E+ G+  Y+GTR+DT+E+ V LRE+ L +++ F+KPQD+LFAGQI
Sbjct: 61  VTSHDGWQLKIEDVKEENGLLAYIGTRLDTDETNVVLREVLLDSKLVFSKPQDRLFAGQI 120

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DRMD F LRYRA   Q +Q++ P  GL G R  LIPHQL IAH+VGRRHAPRVLLADEVG
Sbjct: 121 DRMDRFSLRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG 180

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAGMI+HQQ+L+G AER+LIVVPETLQHQWLVEM+RRFNL FS+FD+ER  EA  
Sbjct: 181 LGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH 240

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           +ADNPFET+Q V+CSLDF+R+S+QR E   +AEWD++VVDEAHHL W  + PSREY  IE
Sbjct: 241 DADNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDIMVVDEAHHLVWSEDAPSREYMAIE 300

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
            LAE+ PGVLLLTATPEQLG ESHFARLRLLD +RF+D+  FV+E+  Y PVADAV  L 
Sbjct: 301 QLAERVPGVLLLTATPEQLGLESHFARLRLLDPNRFHDFAQFVEEQNNYRPVADAVAMLL 360

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF 420
           +G++LSD+  N +++L+ EQD+EPL +A  S +  D    AR+ELID LMDRHGT RVLF
Sbjct: 361 AGKRLSDDELNTLSDLIGEQDIEPLLQAANSES--DNAESARKELIDMLMDRHGTSRVLF 418

Query: 421 RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE 480
           RNTR  +KGFP R +H + L +P+QY T+++V+G++G + T E RA  MLYPE+I+QEFE
Sbjct: 419 RNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKTQEERARDMLYPEQIYQEFE 478

Query: 481 GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM 540
           G+  +WW FD RV WL+  + A RS+K+LVI ++A+TALQLEQ LREREGIRA VFHEGM
Sbjct: 479 GDTGTWWNFDPRVEWLMGYLTAHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGM 538

Query: 541 SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD 600
           SI+ERD+AAA+F +E+ GAQVL+CSEIGSEGRNFQFA+ LVMFDLPFNPDLLEQRIGRLD
Sbjct: 539 SIVERDRAAAWFGEEDSGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLD 598

Query: 601 RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAA-G 659
           RIGQ  DI ++VPYL +T+Q++L RWF EGL+AF  TCPTGR +YD     LI  LAA  
Sbjct: 599 RIGQAHDIQIHVPYLEKTAQSVLVRWFHEGLDAFEHTCPTGRTIYDQVHGDLIGYLAAPE 658

Query: 660 GGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
             E  + +I+   + +  LK+QLE GRDRLLE+HSNGGEKAQ +AE I + D DT L++F
Sbjct: 659 NAEGFDELIKSCREKHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTCLISF 718

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
           +++LFD +G++Q+DRGEN +V+TP++HM+VP +PGLP +G TITF+RD ALSRED  FI+
Sbjct: 719 SMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFIT 778

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
           WEHP+++ G+DL++S   G+  +SLLKNKALPVGT+L+EL+YVV+AQAPK+  ++RFLP 
Sbjct: 779 WEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLTRFLPP 838

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +P+R+L+D  G +L+ QVEFESFNRQLS VNRH  SKLV++VQ DVH ++   ET +E  
Sbjct: 839 TPVRLLLDKNGTNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKA 898

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
             A+ + A+ +  + L++EL RL ALKAVNPNIRD+E+  ++   +++   + QA ++LD
Sbjct: 899 ARALIDAARSEADEKLSAELSRLEALKAVNPNIRDDELAAIESNRQQVLESLNQAGWRLD 958

Query: 960 SLRLIVVAH 968
           +LRLIVV H
Sbjct: 959 ALRLIVVTH 967