Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 952 a.a., helicase from Escherichia coli ECRC62

 Score =  116 bits (291), Expect = 6e-30
 Identities = 134/582 (23%), Positives = 252/582 (43%), Gaps = 74/582 (12%)

Query: 57  VGDVVDSQQGWSL-QVEQVVED-QGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQD- 113
           + ++V  ++G  L ++EQ VE      T+L   V+ E +     ++++ +Q+R   P D 
Sbjct: 39  ISELVRGKEGLFLTKLEQKVEILDPAKTHL---VEDESANYQAAQLYIESQLRQRVPTDS 95

Query: 114 KLFAGQIDRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRV 173
           K+  G +  MD+                             +P QL        +   R+
Sbjct: 96  KVHFGHLAAMDS-----------------------------MPFQLDPTRMALAQPRQRI 126

Query: 174 LLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDE- 232
           L+AD VGLGKT+EAG+++ + +  GR +RIL++  +++  Q+  E   RF +  +  D  
Sbjct: 127 LIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVKSMLTQFQKEFWSRFAIPLTRLDSA 186

Query: 233 --ERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPE 290
             ++         NPF      + S+D L++  +       A WD++V+DEAH++     
Sbjct: 187 GLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWWDIIVIDEAHNVAERGT 246

Query: 291 KPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDA-----DRFYDYEAFVKE 345
              R  ++ + LA ++  +++L+ATP     ES  + + +LD       + Y+Y  F  +
Sbjct: 247 SSLRS-KLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTAIANPKEYEYADFADK 305

Query: 346 EEQYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQEL 405
                     V    SGE   +    K+T L S  + E   + +ES   +D+   A+   
Sbjct: 306 NLVVRRFKKDVKDQMSGE-FPERNIVKLTRLASGAEEEAYRRLVESQFRDDDDEQAQSN- 363

Query: 406 IDNLMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEAR 465
               + +    + LF +  A       R   L  LE    + +  ++  +    L     
Sbjct: 364 -KGRLFKITLEKALFSSPMACASVVANR---LKRLESRKDHNSQSQINELESLLLALNNI 419

Query: 466 AMKMLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQ-LEQA 524
                   ++  +   ++ +W              KA  +E  LVI + +   L+ LEQ 
Sbjct: 420 DASQFSKYQLLLDTIRKDLAW--------------KANNTEDRLVIFTESIKTLEFLEQQ 465

Query: 525 LR-----EREGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNF-QFAN 578
           LR     + + I      +G +++     A  F + +   ++L+CS++ SEG N    ++
Sbjct: 466 LRADLKLKDDQIATLRGDQGDTVLMETVEA--FGKTQSPLRLLVCSDVASEGINLHHLSH 523

Query: 579 QLVMFDLPFNPDLLEQRIGRLDRIGQKRDIDVYVPYLTETSQ 620
           +++ FD+P++  + +QR GR+DR GQK    +    LTE S+
Sbjct: 524 KMIHFDIPWSLMVFQQRNGRIDRYGQKHQPQIRY-LLTEASE 564