Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 981 a.a., RNA polymerase-associated protein RapA from Dickeya dianthicola ME23

 Score = 1239 bits (3205), Expect = 0.0
 Identities = 611/982 (62%), Positives = 771/982 (78%), Gaps = 16/982 (1%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F LGQRWISDTESDLGLGTVVA+DAR VTL+F AS ENR+Y+R+DAP+TRV+FN GD 
Sbjct: 1   MPFTLGQRWISDTESDLGLGTVVAMDARMVTLLFPASGENRLYSRNDAPITRVMFNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDT-------------EESGVALREIFLSNQIR 107
           + S +GW L+VE V ++ G+ TY+G R+D               +    LRE+FL +++ 
Sbjct: 61  ITSHEGWQLRVEDVHDENGLRTYIGQRLDAIGQQLDTIGQQLDTDEPTELREVFLDSKLT 120

Query: 108 FNKPQDKLFAGQIDRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGR 167
           FNKPQD+LFAGQIDRMD F LRYRA  +Q +Q   P  GL GMRA LIPHQL+IA EVG+
Sbjct: 121 FNKPQDRLFAGQIDRMDRFALRYRAHRHQLEQALQPWGGLRGMRASLIPHQLHIAREVGQ 180

Query: 168 RHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHF 227
           RHAPRVLLADEVGLGKTIEAGMIIHQQ+L GRAER+LIVVPETLQHQWLVEM+RRFNL F
Sbjct: 181 RHAPRVLLADEVGLGKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLLF 240

Query: 228 SIFDEERCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEW 287
           S+FD+ER  EA  ++DNPFET+Q ++CSLDF+R++  RFEQ L+A+WDLLVVDEAHHL W
Sbjct: 241 SLFDDERYAEARLDSDNPFETEQLIICSLDFVRRNPSRFEQLLDADWDLLVVDEAHHLVW 300

Query: 288 HPEKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEE 347
               PS  Y+ IE LA   P VLLLTATPEQLG+ESHFARLRLLD +RF+DY  F+ E++
Sbjct: 301 SEAAPSAGYKAIECLARAIPAVLLLTATPEQLGQESHFARLRLLDPNRFHDYHEFIAEQQ 360

Query: 348 QYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELID 407
           QY PVADAVT L SG +++D  +N + ++L EQD+EPL K++ S  SED  A ARQELI 
Sbjct: 361 QYRPVADAVTLLLSGNRINDSERNALGDMLGEQDIEPLLKSIASD-SEDS-AAARQELIT 418

Query: 408 NLMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAM 467
            LMDRHGT RVLFRNTR  +KGFP R +H + L +P+QY T++RV+G++  + + E  A 
Sbjct: 419 MLMDRHGTSRVLFRNTRQGVKGFPKRELHQIKLPLPTQYQTAIRVSGIMNTRKSAEDCAR 478

Query: 468 KMLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALRE 527
            MLYPE+I+Q+FE + ++WW FD RV W+L+ + + R EK+LVI ++A+TALQLEQ LR 
Sbjct: 479 DMLYPEQIYQQFEDDNATWWSFDPRVEWMLDFLTSHRDEKVLVICAKAATALQLEQVLRT 538

Query: 528 REGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPF 587
           RE IRA VFHEG+SI+ERD+AAAYFA EE GAQVLICSEIGSEGRNFQFA+ L+MFDLPF
Sbjct: 539 REAIRAAVFHEGLSILERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLIMFDLPF 598

Query: 588 NPDLLEQRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDA 647
           NPDLLEQRIGRLDRIGQ RDI + VPYL  T+QA+L RW+ EGL+AF  TCPTGR++YD+
Sbjct: 599 NPDLLEQRIGRLDRIGQSRDIQILVPYLENTAQALLVRWYHEGLDAFEHTCPTGRSIYDS 658

Query: 648 FAERLIPILAAGGGEE-LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQ 706
             E+ I +LA    +  L+  I    + +  LK+QLE GRDRLLEMHSNGGE+AQ +AE 
Sbjct: 659 HYEQFINLLAKPSEQTGLDEFIHACRQQHDALKTQLEQGRDRLLEMHSNGGEQAQALAEA 718

Query: 707 IAKTDGDTNLVTFALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDR 766
           IA+ D D NLV FAL+LFD IG+HQ+DR +N +V+TP+EHM+VP +PGLP +G TITFDR
Sbjct: 719 IARQDNDVNLVNFALNLFDIIGIHQDDRSDNLIVLTPSEHMLVPDFPGLPQDGCTITFDR 778

Query: 767 DTALSREDMHFISWEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQ 826
           D ALSRED  F+SWEHP+++ G+DL++S   G+CAVSLLKNKALPVGT+L ELVYVV+AQ
Sbjct: 779 DQALSREDAQFVSWEHPLIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQ 838

Query: 827 APKRSGISRFLPVSPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVH 886
           APK+  ++RFLP +PIRIL+D +G +L++QVEFESFNRQLS VNRH +SKLV++VQ DVH
Sbjct: 839 APKKLQLTRFLPPTPIRILLDRKGANLAAQVEFESFNRQLSAVNRHTSSKLVNAVQDDVH 898

Query: 887 RLITASETAVEPRVSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKE 946
            ++  ++  VE +   +   AQR+ +  L  E ERL ALKAVNPNIRD+E+E L++Q ++
Sbjct: 899 DMLQKAQPLVEAQAQELIADAQRNAETQLRREQERLEALKAVNPNIRDDELEALEEQREQ 958

Query: 947 LTGYIAQAQYQLDSLRLIVVAH 968
           +   + QA ++LD++RL++VAH
Sbjct: 959 VLLNLQQANWRLDAIRLVMVAH 980