Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 967 a.a., RNA polymerase-associated protein RapA from Dickeya dadantii 3937

 Score = 1252 bits (3239), Expect = 0.0
 Identities = 615/969 (63%), Positives = 774/969 (79%), Gaps = 4/969 (0%)

Query: 1   MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV 60
           M F LGQRWISDTESDLGLGTVVA+DAR VTL+F AS ENR+Y+R+DAP+TRV+FN GD 
Sbjct: 1   MPFTLGQRWISDTESDLGLGTVVAIDARMVTLLFPASGENRLYSRNDAPITRVMFNPGDT 60

Query: 61  VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
           + S + W LQVE V ++ G+ TY+G R+DT+E    LRE+FL +++ FNKPQD+LFAGQI
Sbjct: 61  ITSHESWQLQVEDVRDEDGLRTYIGQRLDTDEPA-ELREVFLDSKLTFNKPQDRLFAGQI 119

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           DRMD F LRYRA  +Q +Q   P  GL GMRA LIPHQL+IA EVG+RHAPRVLLADEVG
Sbjct: 120 DRMDRFALRYRAHRHQLEQALQPWGGLRGMRASLIPHQLHIAREVGQRHAPRVLLADEVG 179

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAGMIIHQQ+L GRAER+LIVVPETLQHQWLVEM+RRFNL FS+FD+ER  EA  
Sbjct: 180 LGKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEARL 239

Query: 241 EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE 300
           ++DNPFET+Q ++CSLDF+R++  RFEQ L+A+WDLLVVDEAHHL W  + PS  Y+ IE
Sbjct: 240 DSDNPFETEQLIICSLDFVRRNPSRFEQLLDADWDLLVVDEAHHLVWSEDAPSAGYKAIE 299

Query: 301 ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF 360
            LA   P VLLLTATPEQLG+ESHFARLRLLD +RF+DY  F+ E++QY PVADAVT L 
Sbjct: 300 RLARAIPAVLLLTATPEQLGQESHFARLRLLDPNRFHDYHEFIAEQQQYRPVADAVTLLL 359

Query: 361 SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF 420
           SG ++SD  +N + E+L EQD+EPL K++ S  SED +A ARQELI  LMDRHGT RVLF
Sbjct: 360 SGSRISDGERNALGEMLDEQDIEPLLKSIASD-SEDSVA-ARQELITMLMDRHGTSRVLF 417

Query: 421 RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE 480
           RNTR  +KGFP R +H + L +P+QY T++RV+G++  + + E  A  MLYPE+I+Q+FE
Sbjct: 418 RNTRQGVKGFPKRELHQIKLPLPTQYQTAIRVSGIMNARKSAEDCARDMLYPEQIYQQFE 477

Query: 481 GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM 540
            + ++WW FD RV W+L+ + + R EK+LVI ++A+TALQLEQ LR RE IRA VFHEG+
Sbjct: 478 DDNATWWSFDPRVEWMLDFLTSHRDEKVLVICAKAATALQLEQVLRTREAIRAAVFHEGL 537

Query: 541 SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD 600
           SI+ERD+AAAYFA EE GAQVLICSEIGSEGRNFQFA+ L+MFDLPFNPDLLEQRIGRLD
Sbjct: 538 SILERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLIMFDLPFNPDLLEQRIGRLD 597

Query: 601 RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGG 660
           RIGQ RDI + VPYL  T+QA+L RW+ EGL+AF  TCPTGR++YD+  E+LI +LA   
Sbjct: 598 RIGQSRDIQILVPYLENTAQALLVRWYHEGLDAFEHTCPTGRSIYDSHYEQLINLLAKPS 657

Query: 661 GEE-LEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTF 719
            +  L+  I    + +  LK QLE GRDRLLEMHSNGGE+AQ +AE IA+ D D NLV F
Sbjct: 658 EQTGLDEFIHTCRQQHDALKVQLEQGRDRLLEMHSNGGEQAQALAEAIAEQDNDVNLVNF 717

Query: 720 ALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFIS 779
           AL+LFD IG+HQ+DR +N +V+TP++HM+VP +PGLP +G TITFDRD ALSRED  F+S
Sbjct: 718 ALNLFDIIGIHQDDRSDNLIVLTPSDHMLVPDFPGLPQDGCTITFDRDQALSREDAQFVS 777

Query: 780 WEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPV 839
           WEHP+++ G+DL++S   G+CAVSLLKNKALPVGT+L ELVYVV+AQAPK+  ++RFLP 
Sbjct: 778 WEHPLIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLTELVYVVEAQAPKKLQLTRFLPP 837

Query: 840 SPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPR 899
           +PIR+L+D +G +L++QVEFESFNRQLS VNRH +SKLV++VQ DVH ++  ++  VE +
Sbjct: 838 TPIRVLLDRKGANLAAQVEFESFNRQLSAVNRHTSSKLVNAVQDDVHDMLQKAQPLVEAQ 897

Query: 900 VSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLD 959
             A+   AQR  +  L  E ERL ALKAVNPNIRD+E+E L++Q +++   + QA ++LD
Sbjct: 898 AQALIADAQRSAETQLRREQERLEALKAVNPNIRDDELEALEEQREQVLLNLQQANWRLD 957

Query: 960 SLRLIVVAH 968
           ++RL++VAH
Sbjct: 958 AIRLVMVAH 966