Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1137 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 55.5 bits (132), Expect = 2e-11
 Identities = 94/443 (21%), Positives = 178/443 (40%), Gaps = 56/443 (12%)

Query: 174  LLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEE 233
            +LAD++GLGKT++   ++     TG  +  LIV  +TL + W  E   +F  + +I   +
Sbjct: 699  ILADDMGLGKTLQVLTLLLHTKETGGKQPNLIVATKTLLYNW-EEQTAKFTPNLTIC--K 755

Query: 234  RCVEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPS 293
               ++  +          ++ + D + KS  RF   +E ++  L+ DEA  ++      +
Sbjct: 756  YYGQSRKKLQKELRHHDLIITTYDTV-KSDIRFFGNMEFQY--LITDEAQAIK---NTGT 809

Query: 294  REYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKE---EEQYA 350
              Y+ I  L  Q    L L+ TP +      +A +  ++   F+  EA  +    E+   
Sbjct: 810  DRYKAISLLNAQFR--LALSGTPIENSVMDLYALMNFVNPG-FFGTEANFRNIFLEKGRV 866

Query: 351  PVADAVTALFSGEK--LSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDN 408
              +  + AL +  K  +    K K+ + L ++    L+  +E    +   +L R      
Sbjct: 867  DKSPRMEALQTAIKPFILRRTKEKVAKDLPKKTEMVLYCEMEPEQRKAYESL-RNYFKGE 925

Query: 409  LMDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMK 468
            L D+     +   N +       +R V   P+ +P  Y                      
Sbjct: 926  LEDKISKEGLNKSNLKVLEGLMRLRQVCDHPVLVPDHYN--------------------- 964

Query: 469  MLYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALRER 528
                      ++G  +       +++ L+E++  K     L++ S+ +  L+L     E+
Sbjct: 965  ----------YKGNSA-------KMDALMEQILEKTGNHKLLVFSQFTGMLKLIAKALEK 1007

Query: 529  EGIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFN 588
            EGI+ +      S I R KA   F ++E     L+  + G  G N    + + + D  +N
Sbjct: 1008 EGIQYSYLDGQTSEISRRKAVQDFQEDESVRVFLLSLKAGGSGLNLTAGDYVFLVDPWWN 1067

Query: 589  PDLLEQRIGRLDRIGQKRDIDVY 611
            P +  Q I R  RIGQ + +  Y
Sbjct: 1068 PAVESQAIDRCYRIGQDKKVMAY 1090