Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 953 a.a., RNA polymerase-associated protein RapA from Alteromonas macleodii MIT1002

 Score =  840 bits (2169), Expect = 0.0
 Identities = 448/977 (45%), Positives = 630/977 (64%), Gaps = 47/977 (4%)

Query: 3   FALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVD 62
           F++GQRW+S+TE +LGLG V+  D R+V +++ A+ E R Y + DAP+TR+IF +G+ V 
Sbjct: 7   FSVGQRWLSNTEIELGLGVVIGSDFRSVEVLYPATGEARKYTKQDAPLTRLIFEIGETVK 66

Query: 63  SQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQIDR 122
           SQ GW + + +  E Q ++ Y G R DT+     L E  L + IR N+P+ +LF+ Q+D 
Sbjct: 67  SQDGWEMTITEKEESQDLFIYHGLREDTKAQA-RLPETMLDSHIRLNQPEKRLFSQQLDN 125

Query: 123 MDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGLG 182
              F LR RAL +QY   +S   GL G R  LIPHQL+IA EVG RHAPRVLLADEVGLG
Sbjct: 126 PKWFDLRERALDHQYDYLRSNTIGLAGARISLIPHQLHIASEVGGRHAPRVLLADEVGLG 185

Query: 183 KTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEA 242
           KTIEA +IIHQQ+ TGRAER+LI+VP++L HQWLVEM+RR NL F+I+DE RC EA  ++
Sbjct: 186 KTIEAALIIHQQLKTGRAERVLILVPDSLMHQWLVEMLRRVNLPFAIYDESRC-EAIEKS 244

Query: 243 D-------------NPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHP 289
           +             NPFE  Q VLCS+DFL KS +R +Q   A WDL+VVDEAHHL W  
Sbjct: 245 EGLQDDETSDASAVNPFENDQLVLCSIDFLSKSEKRQQQIQAAGWDLMVVDEAHHLAWSS 304

Query: 290 EKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQY 349
           E PS EY  +EALA QTPGVLLLTATP+QLG ESHFARLRLLD  RF+ Y+AF+ EE +Y
Sbjct: 305 EAPSAEYLCVEALANQTPGVLLLTATPDQLGHESHFARLRLLDPARFHSYDAFLDEESKY 364

Query: 350 APVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNL 409
           + +ADAV  L S  + +D+ ++K+ E   +         +  HA +      R  L+  L
Sbjct: 365 SQLADAVAPLLSDAEPNDKQRSKLAEFAPD---------VMEHAGDLSSPENRHALLHQL 415

Query: 410 MDRHGTGRVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKM 469
           +D HGTGR+LFRN RA I+GFP+R +    L +P  Y+ ++      GG LT        
Sbjct: 416 IDCHGTGRMLFRNRRANIEGFPMRKLSAYELALPEVYSDAVS-----GGDLTYS------ 464

Query: 470 LYPEEIFQEFEGEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALRERE 529
           LYPE +        +SW + D RV WLL+ +++ + EKIL+I + A TA +L + +R + 
Sbjct: 465 LYPERMASVV----NSWTKQDPRVEWLLDFMQSVKPEKILLICASARTAQELGEVIRTQT 520

Query: 530 GIRATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNP 589
           GIR +VFHEGMSI+ERDKAA YFA EE GAQ+L+CSEIGSEGRNFQFA+ LV+FDLP  P
Sbjct: 521 GIRHSVFHEGMSIVERDKAAHYFADEEDGAQILLCSEIGSEGRNFQFAHHLVLFDLPITP 580

Query: 590 DLLEQRIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFA 649
           DLLEQRIGRLDRIGQ + + ++VPYL +T+Q +L  W+ EGLNAF +TCPTG  V+D   
Sbjct: 581 DLLEQRIGRLDRIGQTQTVQIHVPYLAKTAQHVLLDWYHEGLNAFEKTCPTGSGVFDDVK 640

Query: 650 ERLI-PILAAGGGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIA 708
             LI   L        + ++  S  LN  L +QLE GRDRLLE++++G  + +Q+ E I 
Sbjct: 641 PLLIGACLHPDDMSARDELVNMSVTLNSQLVAQLEAGRDRLLELNASGEGRVEQLLEDII 700

Query: 709 KTDGDTNLVTFALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDT 768
             D + +L  F   +FDAIG+ Q+++G +  ++ P E  MV   PGL  EG T+T+ R  
Sbjct: 701 TLDSEQDLSRFMGRVFDAIGVQQDEKGNDCFILMPTE-SMVSQLPGLDPEGMTVTYKRRV 759

Query: 769 ALSREDMHFISWEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAP 828
           A + E++ F+SW+HP+V   +D+++++  G  ++  +   +LP G   +E ++V+ AQAP
Sbjct: 760 ATTLENVQFLSWDHPLVHTAMDVVLTDVHGKSSMGFIAEPSLPKGAYWVEALFVLQAQAP 819

Query: 829 KRSGISRFLPVSPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRL 888
           K   + RFLP +P+R+ +DA+GN   S++ F+   +    + R ++++L+ ++Q  +   
Sbjct: 820 KALQLGRFLPQTPVRVCLDAQGN--PSELSFDVKRK----IGRKISAQLLKALQQPLELA 873

Query: 889 ITASETAVEPRVSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELT 948
           I  +      + +  +  A   M  +LN E++RL  L+  NP +RD EIE ++ Q+  L 
Sbjct: 874 IEKARKLAHQQANQKQHDALNSMHSTLNEEIQRLRDLQKRNPAVRDSEIEFIETQMNALD 933

Query: 949 GYIAQAQYQLDSLRLIV 965
             I  A  QLD++R++V
Sbjct: 934 KVIQDADVQLDAIRIVV 950