Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 1067 a.a., RNA polymerase-associated protein RapA from Acinetobacter radioresistens SK82

 Score = 46.6 bits (109), Expect = 9e-09
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 492  RVNWL---LEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSI-----I 543
            +V+WL   LE +K K +EK+++        + L++ L ER G+  T  +   +      +
Sbjct: 896  KVDWLIKTLEVIKTK-NEKVIIFTEFRDIQVFLKRILLERFGLNVTTVNGDSNTSSKKGL 954

Query: 544  ERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIG 603
             R      F    G   +++ +     G N Q AN ++ +   +NP   +Q   R  RIG
Sbjct: 955  TRQNLIDKFQATSGFNVIILSTTAVGFGVNIQKANHVIHYTRSWNPAKEDQATDRAYRIG 1014

Query: 604  QKRDIDVYVP 613
            Q +++ VY P
Sbjct: 1015 QDKEVFVYYP 1024



 Score = 41.6 bits (96), Expect = 3e-07
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 24/182 (13%)

Query: 70  QVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQ-------------IRFNKPQDKLF 116
           Q EQ  +DQ +     T V  +++   L  +  SN+             ++  K    L 
Sbjct: 479 QAEQEGKDQVLIPNANTEVSLDDAKKLLNSLSDSNRKEPIGTLEEPRVNLQKKKKDTLLI 538

Query: 117 AGQIDRMDNFVLRYRALTNQYQQHKSPMRGLCGMRA---GLIPHQLY-IA-----HEVGR 167
           A  ID+ +    R   L    + H  P R     R+    L  HQ Y IA     H+   
Sbjct: 539 ANNIDKAEFTKQRADQLVFDKKNHP-PARLPSSFRSQEFSLKQHQEYGIAWLQNLHQYAP 597

Query: 168 RHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAER-ILIVVPETLQHQWLVEMMRRFNLH 226
                 LLAD++GLGKT++    I + +   + ++ +L+V P +L   W  E  R F+  
Sbjct: 598 EQVSGCLLADDMGLGKTLQLLCFIGEYLENAKDKKPVLVVAPVSLLENWEAEANRFFSAK 657

Query: 227 FS 228
           F+
Sbjct: 658 FA 659