Pairwise Alignments

Query, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

Subject, 942 a.a., RNA polymerase-associated protein RapA from Acinetobacter radioresistens SK82

 Score =  735 bits (1898), Expect = 0.0
 Identities = 416/972 (42%), Positives = 592/972 (60%), Gaps = 44/972 (4%)

Query: 3   FALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVD 62
           FA+GQRW+SDTE++LGLG ++ +D R+++++F  S+E RVYAR++AP++R+IFN+ D + 
Sbjct: 4   FAIGQRWLSDTETELGLGVLIDVDERSISILFPKSDETRVYARNNAPLSRIIFNINDEIQ 63

Query: 63  SQQGWSLQVEQVVEDQGV--YTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI 120
            Q+G    VE + +  GV  Y  + T  + E+   AL E  +  QI+ +KP D+L A QI
Sbjct: 64  DQEGHKWLVESLEDRHGVVRYNVVRTLENGEQERKALNETRVGAQIQLSKPLDRLLASQI 123

Query: 121 DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG 180
           D  + + LR  AL  Q Q   SP+RGL G R GLIPHQLYIAHEVG+R APRVLLADEVG
Sbjct: 124 DYKEWYDLRIEALIMQAQMQTSPLRGLIGPRVGLIPHQLYIAHEVGQRFAPRVLLADEVG 183

Query: 181 LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS 240
           LGKTIEAG+IIHQQ+ TGR+ERILI+VP++LQ+QW++EM RRFNL FS+FD  R   A  
Sbjct: 184 LGKTIEAGLIIHQQLKTGRSERILILVPDSLQYQWMIEMRRRFNLQFSLFDLTRTA-AIK 242

Query: 241 EAD---NPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSRE-Y 296
           E D   NPF T+Q ++ S+D +       EQA+EA +DLLVVDEAHHL W  E+   + Y
Sbjct: 243 EHDPELNPFLTEQCIIASIDLMIDHDDLREQAVEAGFDLLVVDEAHHLMWSEEEGGNDRY 302

Query: 297 QVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAV 356
            + E LAE+TPGVLLLTATPEQLG ESHFARLRLLD  RF   E F+ EE QY   A   
Sbjct: 303 DLTEELAEKTPGVLLLTATPEQLGVESHFARLRLLDPQRFSSLERFLDEEAQYQHTAQIA 362

Query: 357 TALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTG 416
             L S E LS++  N + +LL  Q        +E    +      R   I  L+DRHGTG
Sbjct: 363 EVLMSDEPLSEQHLNAVQDLLGHQ--------IEDQPEQ------RFRAIHELLDRHGTG 408

Query: 417 RVLFRNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIF 476
           R+LFRNTR AI+GFP R+    PL  P  ++        + GKL  +      ++PEE  
Sbjct: 409 RILFRNTREAIQGFPGRDCRPAPLPAPETWS--------MDGKLREQ------MWPEE-- 452

Query: 477 QEFEGE-ESSWWQFDSRVNWLLEKV-KAKRSEKILVIASRASTALQLEQALREREGIRAT 534
               G+ + +W + D RV WL+E + K  +  K+L+IA        LE ALR   GIR  
Sbjct: 453 ----GQIDGAWMESDPRVAWLMEMLRKDLKHNKVLLIARSGPVVEALENALRLHAGIRTA 508

Query: 535 VFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQ 594
           +FHEGMS++ERD+AAAYFA+E  GAQ+L+CSEIGSEGRNFQFA+ L++FDLP NPD+LEQ
Sbjct: 509 MFHEGMSLLERDQAAAYFAEESYGAQILLCSEIGSEGRNFQFASDLILFDLPANPDVLEQ 568

Query: 595 RIGRLDRIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIP 654
           RIGRLDRIGQ+  I ++VPYL  T+Q  + RW+ E LN F+   P  + + + F   L  
Sbjct: 569 RIGRLDRIGQQNRIQIHVPYLVGTAQERMFRWYNEALNIFSNISPAAQTLQENFIVELKD 628

Query: 655 ILAAGGGEELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDT 714
            L +  G+  E ++EE     + L+S+L+ GRDRLLE +S     AQ+I + +   D +T
Sbjct: 629 CLLSDQGQTFEDLLEEVNVQRQALESELQAGRDRLLEYNSCRPIVAQEIVQALEDYDDNT 688

Query: 715 NLVTFALSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSRED 774
            L  F      +  +  +++    +++ P + M V     L  EG T TF RD A  RED
Sbjct: 689 TLPMFMKRFMASTNIDFDEQSNGTVIIKPTDQMQVQGLT-LDEEGMTATFYRDQAQIRED 747

Query: 775 MHFISWEHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGIS 834
             +++ EHP  +  ++++ ++  G+  V++LK+ AL  G++LLE+ + VD  APK   + 
Sbjct: 748 AQYLTLEHPFTESVMEVIRTQSFGSTNVAVLKSNALKQGSVLLEIWFKVDVVAPKALNLQ 807

Query: 835 RFLPVSPIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASET 894
             LP   +R+L+   G DLS +++       L  ++ +   ++V + +  +      +  
Sbjct: 808 SSLPKQLVRVLLSENGQDLSEKIDPSILKPYLHHLDGNSCRQVVKARREVIDARYKQALD 867

Query: 895 AVEPRVSAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQA 954
                +  +++QA+         E++RL  LK  NP+IR +EIE L +  +E    +   
Sbjct: 868 IARVALPELKQQAKEIYGSKWQYEIDRLSYLKQFNPSIRQDEIERLQKLQREGLNLLDGL 927

Query: 955 QYQLDSLRLIVV 966
               ++++++VV
Sbjct: 928 SVTPEAIQVLVV 939