Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

 Score =  103 bits (256), Expect = 5e-27
 Identities = 73/216 (33%), Positives = 114/216 (52%), Gaps = 23/216 (10%)

Query: 10  KDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYD-SMWARLVDYCPDV------KVVHR 62
           +D  +D++YED+ I+  NKP+GL+  P     H D ++   L+ + PD+       +VHR
Sbjct: 79  QDIELDIVYEDDDILVINKPAGLVVHPA--AGHADGTLLNALLHHVPDIINVPRCGIVHR 136

Query: 63  LDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNR 122
           LD  T+GL++ AK    ++ L  Q Q R   +IY   V GV+    G++N P+      R
Sbjct: 137 LDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAG-GKINAPIGRHGQQR 195

Query: 123 PKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA- 181
            +  V  E G+ +++ Y+V++R    T VR+   TGR+HQ+RVHM  +  P+VGD  Y  
Sbjct: 196 QRMAV-MEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254

Query: 182 ----PP-------EAVEFADRLQLHAAELCFYHPRS 206
               PP       ++++   R  LHA  L   HP S
Sbjct: 255 RFRIPPAASATMVDSLKNFPRQALHARFLELDHPTS 290