Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Sphingobium sp. HT1-2

 Score =  114 bits (284), Expect = 4e-30
 Identities = 73/196 (37%), Positives = 103/196 (52%), Gaps = 7/196 (3%)

Query: 16  VIYEDEHIIAANKPSGLLSVPGRPV-EHYDSMWARLV-DYCPDVKVVHRLDMSTSGLILF 73
           VI+ D+  I  NKP GL +  G    EH D +   L+ D     K+VHRLD  TSG +L 
Sbjct: 186 VIHRDKQAIVINKPPGLATQGGTKTDEHVDRLLDGLIFDAESRPKLVHRLDKDTSGALLL 245

Query: 74  AKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD-WPNRPKQKVCFEEG 132
           A+     +   K F  R   K+Y+A V GV   ++G + LP+         K  V  EEG
Sbjct: 246 ARSSRSAAHFAKAFSSRTARKVYWAIVIGVPSIDDGMIELPITKQPGTGGEKMHVDEEEG 305

Query: 133 RDSLTRYQVVKRE-EKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEAV---EF 188
             + TRY+V++R   +   V L P TGR+HQLRVHM ++GHP+VGD  Y   ++      
Sbjct: 306 LPARTRYRVIERAGNRAAWVELQPYTGRTHQLRVHMAAIGHPLVGDGKYGGKDSFLSGSI 365

Query: 189 ADRLQLHAAELCFYHP 204
           + ++ LHA  +   HP
Sbjct: 366 SRKMHLHARRIRVDHP 381