Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 215 a.a., Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  169 bits (429), Expect = 3e-47
 Identities = 90/199 (45%), Positives = 127/199 (63%), Gaps = 7/199 (3%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDMSTSGLILF 73
           ++ I+ED+ +I  +KP+GLL+VPGR  +  D + AR     PD  VVHRLDM+TSGL++ 
Sbjct: 4   LNTIHEDDQMIVLDKPAGLLAVPGRGPDKQDCLSARAQARWPDALVVHRLDMATSGLVVM 63

Query: 74  AKGKHMESALKKQFQYRLTHKIYYARVWG-----VMEQNEGEVNLPLCCDWPNRPKQKVC 128
           A+G   +  L + F+ R  HK Y A V G     V +     ++LPL  DWPNRP+  V 
Sbjct: 64  ARGIEAQRQLSRAFEQRQVHKRYTAVVAGTLHNPVHDNGWNTIDLPLTIDWPNRPRSIVS 123

Query: 129 FEEGRDSLTRYQVV--KREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEAV 186
            E G+ S+TR+++     ++ TT + L P+TGR+HQLRVH+Q++GHPI+GD LYA PE  
Sbjct: 124 AELGKPSVTRWRLAGPATDDHTTRLELEPVTGRTHQLRVHLQAIGHPILGDMLYATPEQQ 183

Query: 187 EFADRLQLHAAELCFYHPR 205
             A RL LHA +L   HP+
Sbjct: 184 ARAPRLLLHAHQLSLPHPQ 202