Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., RluA family pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  110 bits (274), Expect = 5e-29
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 32/224 (14%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLL--SVPGRPVEHYDSMWARLVDYCPD-------VK- 58
           P+D  + V+YEDE +I  +KP+G++    PG P E   ++   L+ +C +       VK 
Sbjct: 82  PQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDE---TLVNALLAHCGESLAGIGGVKR 138

Query: 59  --VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLC 116
             +VHR+D  TSGL++ AK       L  QF      + Y+A VWG     +GE+   + 
Sbjct: 139 PGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEIEGNIG 198

Query: 117 CDWPNRPKQKVCFEEGRDSLTRYQVVK--REEKTTVVRLIPITGRSHQLRVHMQSLGHPI 174
            +  +R K  V    G+ +LTRY+V+K       ++V     TGR+HQ+RVHM + GHP+
Sbjct: 199 RNPNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTTQGHPL 258

Query: 175 VGDDLYA----------PPEA----VEFADRLQLHAAELCFYHP 204
           VGD +Y           PPE     ++F  R  LHA  L F HP
Sbjct: 259 VGDPVYGRIRGHKGVVLPPEVKTALIQF-PRQALHAYLLGFSHP 301