Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 97.1 bits (240), Expect = 4e-25
 Identities = 75/210 (35%), Positives = 105/210 (50%), Gaps = 19/210 (9%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCP--DVK---VVHRLDMSTS 68
           +D++YED+ I+  NKP  L+  PG        + A L  Y P  DV    +VHRLD  T+
Sbjct: 84  LDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTT 143

Query: 69  GLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKVC 128
           GL++ AK    ++ L +  Q R   + Y A   G M    G VN P+      R    V 
Sbjct: 144 GLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAG-GTVNEPISRHPTKRTHMSV- 201

Query: 129 FEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA----PPE 184
              G+ ++T Y++++     T +RL   TGR+HQ+RVHM  + HP+VGD +Y     PP+
Sbjct: 202 HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDQVYGGRPRPPK 261

Query: 185 AV--EFA------DRLQLHAAELCFYHPRS 206
               EF       DR  LHA  L  YHP S
Sbjct: 262 GASEEFISTLRKFDRQALHATMLRLYHPVS 291