Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  238 bits (606), Expect = 1e-67
 Identities = 122/219 (55%), Positives = 146/219 (66%), Gaps = 1/219 (0%)

Query: 1   MAMTEYNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVV 60
           M M  YNPP++PW+ ++Y+DEHI+  NKPSGLLSVPGR   H DS+  R+    P  + V
Sbjct: 1   MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESV 60

Query: 61  HRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWP 120
           HRLDM+TSG+I+ A  K  E  LK+QF+ R   K Y ARVWG     EG V+LPL CDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCFEEGRDSLTRYQVVK-REEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDL 179
           NRPKQKVC+E G+ + T Y VV+   + T  V L PITGRSHQLRVHM +LGHPI+GD  
Sbjct: 121 NRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 180 YAPPEAVEFADRLQLHAAELCFYHPRSHWLRTLFVPCDF 218
           YA PEA+  A RLQLHA  L   HP      T  VP DF
Sbjct: 181 YASPEALSLAPRLQLHAEMLTITHPAYGNSMTFKVPADF 219