Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Erwinia amylovora T8

 Score = 96.7 bits (239), Expect = 5e-25
 Identities = 72/210 (34%), Positives = 100/210 (47%), Gaps = 19/210 (9%)

Query: 14  IDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDY-----CPDVKVVHRLDMSTS 68
           +D++YED+ I+  NKP  L+  PG        + A L  +      P   +VHRLD  T+
Sbjct: 84  LDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHHFPAIADVPRAGIVHRLDKDTT 143

Query: 69  GLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKVC 128
           GL++ AK    ++ L    Q R   + Y A   G M    G VN P+      R    V 
Sbjct: 144 GLMVVAKTVPSQTHLVDALQRREITREYEAVAIGRMTAG-GTVNEPISRHSTKRTHMAV- 201

Query: 129 FEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA----PPE 184
              G+ + T Y++++     T +RL   TGR+HQ+RVHM  + HP+VGD LY     PP+
Sbjct: 202 HPMGKPATTHYRIMEHFRAHTRLRLRLETGRTHQIRVHMSHISHPLVGDPLYGGRPRPPK 261

Query: 185 AVEFA--------DRLQLHAAELCFYHPRS 206
               A        DR  LHA  L  YHP S
Sbjct: 262 GASEAFIATLRAFDRQALHATMLRLYHPIS 291