Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Erwinia tracheiphila SCR3

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 19/212 (8%)

Query: 10  KDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDY-----CPDVKVVHRLD 64
           +D  +D++YED+ I+  NKP  L+  PG        + A L  Y      P   +VHRLD
Sbjct: 80  QDIALDIVYEDDDILIINKPHNLVVHPGAGNPDGTVLNALLHRYPAICDVPRAGIVHRLD 139

Query: 65  MSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPK 124
             T+GL++ AK    ++ L +  Q R   + Y A   G M    G V+ P+      R  
Sbjct: 140 KDTTGLMVVAKTVPAQTHLVESLQLREITREYEAVAIGRMTAG-GSVDEPISRHSTKRTH 198

Query: 125 QKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA--- 181
             V    G+ + T Y++++     T +RL   TGR+HQ+RVHM  + HP+VGD LY    
Sbjct: 199 MAV-HPMGKPATTHYRIMEHFRAHTRMRLRLETGRTHQIRVHMSHINHPLVGDPLYGGRP 257

Query: 182 -PPE--------AVEFADRLQLHAAELCFYHP 204
            PP+        A+   DR  LHA  L  YHP
Sbjct: 258 RPPKGASDNFISALRKFDRQALHATMLRLYHP 289