Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Erwinia tracheiphila SCR3

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 11/211 (5%)

Query: 16  VIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK---VVHRLDMSTSGLIL 72
           +++ED+H++  NKPSG     G  +        R +   PD +   +VHRLD  TSG++L
Sbjct: 95  ILFEDDHLLVLNKPSGTAVHGGSGLSFGVIEGLRALR--PDARFLELVHRLDRDTSGILL 152

Query: 73  FAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKV-CFEE 131
            AK +    +L +Q + +   K Y A V G    +   V  PL  +     ++ V    E
Sbjct: 153 VAKKRSALRSLHEQLREKGMQKDYLALVKGQWPSHLKTVQTPLLKNILQSGERVVRVSSE 212

Query: 132 GRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPE-----AV 186
           G+ S TR++V +R    T+V+  P+TGR+HQ+RVH    GHPI  DD Y         A 
Sbjct: 213 GKPSETRFKVEERYAYATLVKASPVTGRTHQIRVHTLHAGHPIAFDDRYGEKSFDMQLAG 272

Query: 187 EFADRLQLHAAELCFYHPRSHWLRTLFVPCD 217
               RL LHA  L F HP +  +  +  P D
Sbjct: 273 SGLKRLFLHALALRFTHPATGEVMRVKAPLD 303