Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., pseudouridine synthase, RluA family from Enterobacter asburiae PDN3

 Score = 97.1 bits (240), Expect = 4e-25
 Identities = 75/213 (35%), Positives = 106/213 (49%), Gaps = 19/213 (8%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCP--DVK---VVHRL 63
           P+D  +D++YED+ I+  NKP  L+  PG        + A L  Y P  DV    +VHRL
Sbjct: 79  PQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138

Query: 64  DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRP 123
           D  T+GL++ AK    ++ L +  Q R   + Y A   G M    G V  P+      R 
Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTSG-GTVEEPISRHPTKRT 197

Query: 124 KQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA-- 181
              V    G+ ++T Y++++     T +RL   TGR+HQ+RVHM  + HP+VGD +Y   
Sbjct: 198 HMSV-HPMGKPAVTHYRIMEHFRIHTRLRLRLETGRTHQIRVHMAHITHPLVGDQVYGGR 256

Query: 182 --PPEAV--EFA------DRLQLHAAELCFYHP 204
             PP+    EF       DR  LHA  L  YHP
Sbjct: 257 PRPPKGASDEFISVLRKFDRQALHATMLRLYHP 289