Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Escherichia coli ECRC62

 Score =  100 bits (249), Expect = 4e-26
 Identities = 76/215 (35%), Positives = 107/215 (49%), Gaps = 19/215 (8%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCP--DVK---VVHRL 63
           P+D  +D++YEDE II  NKP  L+  PG        + A L  Y P  DV    +VHRL
Sbjct: 79  PQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138

Query: 64  DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRP 123
           D  T+GL++ AK    ++ L +  Q R   + Y A   G M    G V+ P+    P + 
Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRH-PTKR 196

Query: 124 KQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYA-- 181
                   G+ ++T Y++++     T +RL   TGR+HQ+RVHM  + HP+VGD +Y   
Sbjct: 197 THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR 256

Query: 182 --PPEAVEFA--------DRLQLHAAELCFYHPRS 206
             PP+    A        DR  LHA  L  YHP S
Sbjct: 257 PRPPKGASEAFISMLRKFDRQALHATMLRLYHPIS 291