Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., RluA family pseudouridine synthase from Bacteroides stercoris CC31F

 Score =  109 bits (272), Expect = 9e-29
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 30/224 (13%)

Query: 9   PKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLV--------DYC---PDV 57
           P+D  +D++YED++++  NKP+GL+  PG    +Y       +        DY    P V
Sbjct: 102 PEDIPLDIVYEDKYLMVVNKPAGLVVHPGHG--NYRGTLVNAIAWHMKDIPDYDANDPHV 159

Query: 58  KVVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCC 117
            +VHR+D  TSGL++ AK    ++ L  QF  + T + Y A VWG +EQ+EG +   +  
Sbjct: 160 GLVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTTKRRYRALVWGNVEQDEGTIVGNVGR 219

Query: 118 DWPNRPKQKVC-FEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVG 176
           +  +R +  V   ++G+ ++T Y+V++R    T+V  +  TGR+HQ+RVHM+ +GH +  
Sbjct: 220 NPKDRMQMTVLPDDQGKHAVTHYRVLERLGYVTLVECVLETGRTHQIRVHMKHIGHILFN 279

Query: 177 DDLYAPPEAV----------------EFADRLQLHAAELCFYHP 204
           D+ Y   E +                +   R  LHA  L F HP
Sbjct: 280 DERYGGHEILKGTHFAKYKQFVNNCFDICPRQALHAMTLGFVHP 323