Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., Ribosomal large subunit pseudouridine synthase D from Alteromonas macleodii MIT1002

 Score =  102 bits (255), Expect = 7e-27
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 22/219 (10%)

Query: 10  KDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVK------VVHRL 63
           +D  ++++YEDEHI+  NKP+ L+  PG       ++   L+++CP++       +VHRL
Sbjct: 83  QDIALNIVYEDEHILVINKPADLVVHPGAG-NPSGTVLNALLNHCPEIDKVPRAGIVHRL 141

Query: 64  DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRP 123
           D  T+GL++ AK    ++ L  Q Q R   + Y A   G M    G V+ P+      R 
Sbjct: 142 DKDTTGLMVVAKTIPAQTHLVDQLQRREMSREYEAVALGTMVAG-GIVDAPIGRHATKRT 200

Query: 124 KQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLY--- 180
              V  E G+ ++T ++V+++    T +RL   TGR+HQ+RVHM  + HP++GD +Y   
Sbjct: 201 HMAVR-EMGKPAVTHFRVIEKFRAYTHLRLKLETGRTHQIRVHMAHIKHPLLGDQVYGGR 259

Query: 181 ------APPE---AVEFADRLQLHAAELCFYHPRS-HWL 209
                 A  E   A+    R  LHAA+L  +HP +  W+
Sbjct: 260 PRLPKGASEEFIAALRGFQRQALHAAQLSLFHPETEEWM 298