Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., Ribosomal large subunit pseudouridine synthase A from Alteromonas macleodii MIT1002

 Score =  233 bits (593), Expect = 3e-66
 Identities = 119/232 (51%), Positives = 155/232 (66%), Gaps = 7/232 (3%)

Query: 6   YNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDM 65
           YNPP  P++D +Y+DE ++ A+KPSGLLSVPG+ +EH DS+ +R+    P   VVHRLDM
Sbjct: 8   YNPPMTPYLDFLYQDEDMVVAHKPSGLLSVPGKALEHRDSLISRVNRVYPTATVVHRLDM 67

Query: 66  STSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQ 125
           +TSG+++ A  K     + KQF+ R T K Y+ARV G +EQ+ GEVNLPL CDWPNRPKQ
Sbjct: 68  ATSGILVLALNKDSHRHISKQFELRQTKKRYFARVHGHVEQDSGEVNLPLICDWPNRPKQ 127

Query: 126 KVCFEEGRDSLTRYQVVKR-----EEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLY 180
            V FE G+ ++T + V++R     E   ++V L PITGRSHQLRVHM +LGHPI+GD LY
Sbjct: 128 MVDFERGKKAVTHFDVIERTLDEKERPYSLVALYPITGRSHQLRVHMLALGHPILGDRLY 187

Query: 181 APPEAVEFADRLQLHAAELCFYHPR-SHWLRTLFVPCDFYPEAEEQILQHFD 231
           A  EA+  A RLQLHA  L   HP   HWL    V   F P   + + + F+
Sbjct: 188 AHEEALSMAPRLQLHAESLSLSHPTLGHWLH-FNVAIPFSPFCPKPLSESFE 238