Pairwise Alignments

Query, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., ribosomal large subunit pseudouridine synthase A from Agrobacterium fabrum C58

 Score =  188 bits (477), Expect = 9e-53
 Identities = 95/214 (44%), Positives = 137/214 (64%), Gaps = 2/214 (0%)

Query: 6   YNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDM 65
           YNPP DPW+ +++ D+ ++  +KPSGLLSVPGR     DS+  R+    P   +++RLD 
Sbjct: 10  YNPPLDPWLTIVHRDDDLLVLDKPSGLLSVPGRDPALSDSLMTRVQKQFPKALMINRLDK 69

Query: 66  STSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQ 125
            TSG++L +  +   +A+  QF+ R T K Y A VWG +   EGEV+LPL  D  N+P+ 
Sbjct: 70  DTSGIVLMSLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRH 129

Query: 126 KVCFEEGRDSLTRYQVVKR-EEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPE 184
           +V  E G+ + + ++V++R     T + L P+TGR+HQLRVHM++LGHPI+GD+ YA  E
Sbjct: 130 RVDHENGKPAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFYAEGE 189

Query: 185 AVEFADRLQLHAAELCFYHPRSHWLRTLFVPCDF 218
           A+  A RL LHA E+ F HP    + T  VPC F
Sbjct: 190 ALTAAPRLMLHAQEVGFRHPDGRDV-TYTVPCPF 222