Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., Lipopolysaccharide export system permease protein LptF from Variovorax sp. SCN45

 Score =  107 bits (268), Expect = 4e-28
 Identities = 83/326 (25%), Positives = 148/326 (45%), Gaps = 7/326 (2%)

Query: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60
           M+    L +E  +S  A   VL  + ++   IR L  AS G +    +  ++   +    
Sbjct: 1   MLFHSSLRKELSRSFGATLVVLVTIVMTMMLIRTLGLASKGSVNPQEVFLVMAYTVLGYM 60

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
             +L LSL+I I+ T  R+Y +SE+ +  ++G G    ++     A     + A  AL  
Sbjct: 61  PTILSLSLFIAIVGTLSRMYRDSEMVIWFSSGRGLMDFVKPLFRFAWPVLILIAVMALVG 120

Query: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFID--NIENRKLYNVFVAQLA 178
            PW+  +   + +Q+   + ++ +  G F+ S     V FID    +N K  NVF+  + 
Sbjct: 121 WPWANSQTIGMRKQYEQRSDIERVAPGEFRESAGRVRVFFIDKETPDNSKATNVFIWSVE 180

Query: 179 PRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQRE 238
               I  S   + SG ++ + D R ++ L +G R E         I+ F +Y    G  +
Sbjct: 181 RNMQITTS---ARSGSIENIGDSRYLL-LNNGQRLEQPMANTGLKISEFKTYGTRAGGSD 236

Query: 239 -VKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFA 297
            + +      A  TLSLL +    ++ EL WRI +++      +L + +S+ NPR GR  
Sbjct: 237 GLTNDATPSRARTTLSLLTDPSDMSRGELAWRIGMLLTAVNFVLLALNVSSANPRVGRSG 296

Query: 298 KMGPAILIYLTYFLALSATKSAIEDG 323
            +  A+  ++ Y+  L+  +S I  G
Sbjct: 297 NLLLALFAFVVYYNMLNLGQSWISSG 322