Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Lipopolysaccharide export system permease protein LptF from Sphingobium sp. HT1-2

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 73/342 (21%), Positives = 130/342 (38%), Gaps = 13/342 (3%)

Query: 3   IVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGLL 62
           I RYL R           +  ++ +  K + +    +    P S++  ++   +P    L
Sbjct: 5   IDRYLARLIALPLLGTLVIAAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMLPEYLSL 64

Query: 63  MLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLAP 122
            +P+ L +GILL F +L   SE+ VM A G+    L+R     A   A +      W+ P
Sbjct: 65  GIPIGLMLGILLAFRKLATSSELDVMRAVGLSYGRLLRVPYMFAFALALLNLGIVGWVQP 124

Query: 123 WSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNI-ENRKLYNVFVAQLAPRD 181
            S+     L  +  +      ++ G F       ++    ++ E R L  +FV  +  +D
Sbjct: 125 LSRHAYEALRFELRSGALGASIKVGEFTSLGKRMTLRIERSLDEGRNLRGIFVRAVG-KD 183

Query: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241
               +V  +    +        I  L DG      P      I +F S+D  I   ++++
Sbjct: 184 GQSVAVTAAQGAFLATDDPDTIIFRLRDGVLVNDAPKYKTPRILSFSSHDLPIDLPQIEN 243

Query: 242 AE-RDWEALPTLSLLNNADR----------RAQAELQWRISLVVCIPLLTMLVVPLSAVN 290
              RD +   TL  L +  R            ++   +R+  VV + LL M  +  +   
Sbjct: 244 FRGRDVDREKTLPELFSMGRDPATPTKLRNEVRSNFHFRMVEVVMMMLLPMAALAFAIPP 303

Query: 291 PRQGRFAKMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
            R      +  +I+  +TY       +S    G +  II LW
Sbjct: 304 KRSTSALGVFLSIVFIVTYHKINQYGESIGSLGKIDPIIALW 345