Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  321 bits (822), Expect = 2e-92
 Identities = 156/363 (42%), Positives = 240/363 (66%)

Query: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60
           MII+RYL+RET+KSQ AI F+L L+F  QK +R+L  A DG+IP +++LS++GL +P M 
Sbjct: 1   MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA 60

Query: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
            L+LPLSL++G+L+T G+LY ESEITVM+A G+    L++AA+ LA+ TA VAA N +W 
Sbjct: 61  QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120

Query: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
            PWS   +  ++ +  A   +  L +G FQ++ +GSSV+FI++++     +VF+AQ+ P+
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180

Query: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
            +  PSV+ + SG + +L DG Q++TL  GTR+EG     D+ IT+F  Y  +IG + V 
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVA 240

Query: 241 SAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKMG 300
               D + +   +L N    RA+AEL WRI+LV  + ++ ++VVPLS VNPRQGR   M 
Sbjct: 241 LDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML 300

Query: 301 PAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRFKDRW 360
           PA+L+YL +FL  ++ KS    G L   + +W +N   L  A+++N  D++PVRR +  +
Sbjct: 301 PAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASF 360

Query: 361 KQR 363
            ++
Sbjct: 361 SRK 363