Pairwise Alignments

Query, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., LPS export ABC transporter permease LptF from Escherichia coli ECRC62

 Score =  128 bits (322), Expect = 2e-34
 Identities = 95/367 (25%), Positives = 172/367 (46%), Gaps = 27/367 (7%)

Query: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61
           ++  Y++R T +    I   L  +F S    R L +A++G +   ++L IV   +     
Sbjct: 3   LVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALE 62

Query: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121
           ++LP+ LY+ + +T G++Y +SEIT ++A G     L +A LYLA+  +      +++  
Sbjct: 63  MLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGR 122

Query: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVF--IDNIENRKLYNVFVAQLAP 179
           PW+  +   L +Q  +E  V  L+   F  + +G  ++   +D   NR    +     A 
Sbjct: 123 PWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTAN 182

Query: 180 RDSILPSVMFSHSGDVKELSDGRQIITLYDGTRY----------EGVPTRVDYMITNFDS 229
           R  I  +     S DV + S  +  + L++GT Y          E +   +   +   D 
Sbjct: 183 RTRIFRA----RSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQ 238

Query: 230 YDGLIGQREVKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAV 289
              +  +R+ KS            L  +A     AELQWR S  +   L+ +L + LS V
Sbjct: 239 SPNV--KRKAKSVTE---------LARSAFPADHAELQWRQSRGLTALLMALLAISLSRV 287

Query: 290 NPRQGRFAKMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLD 349
            PRQGRF+ + P  L+++  F      ++ + +G++P+I GLW +   +L+  LM+   D
Sbjct: 288 KPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVARD 347

Query: 350 SIPVRRF 356
              +++F
Sbjct: 348 FSLLQKF 354