Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptG from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., permease from Pseudomonas simiae WCS417

 Score =  238 bits (606), Expect = 2e-67
 Identities = 137/356 (38%), Positives = 206/356 (57%), Gaps = 8/356 (2%)

Query: 5   LDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDVEM 64
           LD YIG +++     VL   +GL+ +  +++++  V + +Y +   L +V L+ PR +  
Sbjct: 4   LDRYIGSSVLIAILAVLGIILGLASLFAFIDEVGNVTD-TYTVWDVLSYVGLTAPRRLYD 62

Query: 65  FFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAP 124
             PMAAL+G LIGLG+LAS+SEL +M+AAG S   I  +V+K  + LM    L+GE+ AP
Sbjct: 63  MMPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLLLMACSVLIGEYVAP 122

Query: 125 QAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVE-NEHLYGLNLWRFDENKKL 183
            A+  A+  RA A   G   S + G+W R  ++FI I  V+    L G+  + FD+ + L
Sbjct: 123 PAETTAQANRALAQGSGDAQSAKHGLWHRQGDEFIHINAVQPGGLLIGVTRYTFDKERHL 182

Query: 184 STVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKES-----LPEYRWRTSLAPDKLAVV 238
               F+++  Y +  +W + D   T   N  + +K S     +P   W  +L P+ L  V
Sbjct: 183 LESSFAKRAQY-SGEKWQLSDVTTTYFRNVGQGTKASTEVINVPSQEWDIALKPELLNTV 241

Query: 239 TVKPEELSLTGLSDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRS 298
            + PE L ++GL  Y+HYLK    ++ RY LA W KV QP+  A ++LMA+SFIFGPLRS
Sbjct: 242 VMIPESLPISGLWGYIHYLKDQGLNNGRYWLAFWVKVLQPVVTAALVLMAISFIFGPLRS 301

Query: 299 VTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGR 354
           VT+G R+ +GV+ GF+F I+ +  GP SLV+G  PLF  L P+ +       LL R
Sbjct: 302 VTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPTAICALAGFWLLRR 357