Pairwise Alignments

Query, 417 a.a., HD-GYP domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Cyclic di-GMP phosphodiesterase response regulator RpfG from Alteromonas macleodii MIT1002

 Score =  123 bits (309), Expect = 9e-33
 Identities = 96/392 (24%), Positives = 183/392 (46%), Gaps = 18/392 (4%)

Query: 5   KITVDRLQPGLYIRLPVKWNEHPFLFNSFKIKSQEQIQLIKHLGIQHVFLNPGLSDSQPL 64
           ++ +D LQPG+Y+   ++      + +   +K+Q  I  +K  GI  V ++  L+ S+  
Sbjct: 4   QVPIDDLQPGMYVNQVLEQTGSLKMRSKGIVKTQAIIDSLKSKGILSVEVD--LAKSKLP 61

Query: 65  PPSVEEATPEEALPPVDSEAEKLWQEKQTRIEKLNEYRRRVQTCEKEFERSLARMRAVVN 124
            P+V    P+E  P V     K     +  I + NE        +  F +SL      V 
Sbjct: 62  EPAVPPEPPKEKEPEVTKPVVK--PVGRDSINEANELYSSAIAIQSSFLKSLKN--GAVK 117

Query: 125 KIRNRPLDAVGEAIILVDDIVDKLLSDDNVTLHLMNSKSEFEDIYFHSLNVSVIAMMIGK 184
            +   PL+++ +++I      + +  + +    L   K   + +  HS+N SV++ +  +
Sbjct: 118 DLS--PLESLSQSLI------ESIFDNKDALSCLTMIKDTDQYLLEHSINCSVLSGIFCE 169

Query: 185 ARGLPAERIKELAFAALFHDIGKVRVPTAIVRKKTPLTEPEENYLRLHTKYGIELADNIE 244
             G   +  ++++  AL  DIG   +P  I       +  +   ++ H + G +L +   
Sbjct: 170 FLGYDRDTTEQVSLGALLMDIGMSLLPDEIRNNTGEFSSDDWEVMKTHVEIGADLVEQCG 229

Query: 245 TFPESAKRVIEQHHELRDGSGYPLGLKGDDIDELAQIVAVANAFDNLCHPNIPSEQKIPY 304
              + + R+IE+HHE  DGSGYP GL GD+I E A+I A+ +A+D L           P 
Sbjct: 230 DISDLSLRIIEEHHERVDGSGYPRGLVGDEISEFARIAAIVDAYDALTSNRTHKNSITPT 289

Query: 305 VALSHLFKNCKHIYNAENLGILVKFMGVFPPGTVVQLSNDMVGLVISVNASSLLYPNVLI 364
            AL  L        + E +   ++ +GV P G++V+L +  +G+V  +N    + P+V+ 
Sbjct: 290 QALKRL--TATENLDQELVKQFIQCIGVHPVGSLVRLKSGKLGIVSKINPKDPVSPHVMT 347

Query: 365 YDPSVPR--SQAPIIDLADRDLKIVNAILPNK 394
           +     +  ++   +DL+  D +IV+ + P +
Sbjct: 348 FYSVTSQHFNEVKRVDLSQYDDEIVSGVRPEE 379