Pairwise Alignments

Query, 601 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., putative Long-chain-fatty-acid-CoA ligase from Pseudomonas putida KT2440

 Score = 84.7 bits (208), Expect = 9e-21
 Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 27/281 (9%)

Query: 16  IAQGGDNAALKHKQNGQWQAINWHQFGEQLDELSMALLAQGIGVQDKIAIFSNNMPRWTI 75
           +A+  D+ AL  +  G     +W Q  EQ++  + AL+A G+   D++ I+S N  +W I
Sbjct: 28  VARCCDSEALVSRHQGL--RYSWRQLAEQVEIYARALIALGVNTGDRVGIWSPNCAQWCI 85

Query: 76  ADFAALQIRAVTVPIYPTNTPEQAAYILQNADVKVV-----------------FVGEQAQ 118
              A+ ++ A+ V I P     +  Y+L+ +  + +                  V E A 
Sbjct: 86  LQLASAKVGAILVNINPAYRVGELEYVLRQSGCRWLVCAEAFKTSDYHTMVQELVPELAS 145

Query: 119 FDAALSQFEQCPELRLIVAMNANIDLKQASCAMHWDEFVAQSHHQDRAPLDALIEQANYD 178
                   E  PELR ++++ AN      +  + W  F  ++         A  +   +D
Sbjct: 146 AAPGELASECLPELRGVISLAAN----PPAGFLPWHAFAERAGQTSVEACTARQQSLQFD 201

Query: 179 DLFTLIYTSGTTGTPKGVMLDYRNIGAQLEGHDQRLNLTQEDVSLCFLPLSHVFERAWTA 238
               + YTSGTTG PKG  L + NI        + L LT  D  +  +PL H F      
Sbjct: 202 QPVNIQYTSGTTGAPKGATLSHYNILNNGFMVGESLGLTARDRMVIPVPLYHCFGMVMAN 261

Query: 239 Y-VLYKGATNCYLQDVAHVR---EALAEVRPTVMCAVPRFY 275
              +  G+T  Y  D         A+AE R T++  VP  +
Sbjct: 262 LGCITHGSTMIYPNDAFDAELTLRAVAEERATILYGVPTMF 302



 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 369 VKLGYGMTETTAT---VSCWDDHCFNPDSIGLSMPGAQVKI----------GENNEILVR 415
           V++ YGMTET+         DD      ++G + P  + K+          GE  E+  R
Sbjct: 346 VQIAYGMTETSPVSLQTGPDDDLELRVTTVGRTQPQLENKLVDADGCIVPRGEIGELCTR 405

Query: 416 GPMVMRGYYKLDKETTESFDEQGFLKTGDAGHIDENGNLFITDRIKELMKTSGGKYIAPQ 475
           G  VM GY+   + T ++ D  G++ +GD   +DE G + I  R K+++   GG+ I P+
Sbjct: 406 GYSVMLGYWDNPQATADAIDPAGWMHSGDLAVMDEQGYVRIVGRNKDMI-IRGGENIYPR 464

Query: 476 VIE 478
            +E
Sbjct: 465 ELE 467