Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 234 a.a., RNA polymerase sigma factor from Rhodanobacter sp000427505 FW510-R12

 Score = 81.6 bits (200), Expect = 1e-20
 Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 2/184 (1%)

Query: 5   LTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPT 64
           L D  L+  V++G ++AF  ++ R   ++  +    +    +  DV QE++++AY  + +
Sbjct: 15  LDDHALVALVRDGHREAFRHIMQRCNQRLFRVARAVLGEDSEAEDVLQESYMRAYHKLDS 74

Query: 65  FRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKEL--SNPENI 122
           FRG+S   TWL  I +N A+  +  +        VDA   + ++      +    +P   
Sbjct: 75  FRGDSTLLTWLTSIVLNEARGRLRKRHTMVDLEQVDAAVDDTHQVIQFPSKFGSEDPAVA 134

Query: 123 TLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAV 182
               +++  +  AID LP   +T   +RE++  S EE A ++     TV++R++RAR  +
Sbjct: 135 AARSQIRHLLEHAIDDLPPAFRTVYMMREVEECSVEETAHLLAIKPETVKTRLYRARRLL 194

Query: 183 EKKI 186
              +
Sbjct: 195 RTSL 198