Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., ECF RNA polymerase sigma factor SigR from Xanthobacter sp. DMC5

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 59/150 (39%), Positives = 79/150 (52%), Gaps = 10/150 (6%)

Query: 37  ISRYVSNSGDVA-DVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPP 95
           ++RY++   D A D+ Q+A+++AYRA   F+G SA   WL  I  N        + R   
Sbjct: 83  LARYLTRDADAAQDIVQDAYLRAYRAFADFKGGSA-RAWLLAIVRNCHLTWRDLRRREMQ 141

Query: 96  ASDVDAEEAEFYEGGDA------LKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTL 149
               DA  AE  EGGD       L +   PE I L +     V   ++ LP+ L+  + L
Sbjct: 142 RRAPDAVAAE--EGGDPEDAIDLLVDGETPETILLRRSQADRVRGTLELLPEPLREVLVL 199

Query: 150 RELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
           RELD LSY EIA+V   PVGTV SR+ RAR
Sbjct: 200 RELDELSYREIADVAGVPVGTVMSRLSRAR 229