Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 76.3 bits (186), Expect = 3e-19
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 30  QNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVA 89
           Q K+   I + V N  D  D+ Q  +++A+R    F G +   TW+  IA N  +NH   
Sbjct: 27  QKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIRNHF-- 84

Query: 90  QSRRPPASDVDAE-EAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDL-KTAM 147
             RR  A  V  E +   + G +  + L       +++ L+KT+  AID LP ++ KT  
Sbjct: 85  --RRMYAKPVHCEFDESLWHGQEDNRNLD--WEFEVNRRLEKTL-SAIDHLPVEMRKTLY 139

Query: 148 TLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEK 184
              E DG SY++ A+ +D P+GTVRSR+ RARE +++
Sbjct: 140 ASLETDG-SYQDTADALDIPIGTVRSRLSRAREQLKR 175