Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score =  248 bits (634), Expect = 4e-71
 Identities = 121/190 (63%), Positives = 153/190 (80%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M  Q  DQ L+ERVQ GDK+AF+LLVL+YQ+K+  LI R+V ++ +  DVAQEAFIKAYR
Sbjct: 1   MLTQEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+  FRG+SAFYTWLYRIA+NTAKN++V++ RRPP SDV +E+AEFY+G   LK+L +PE
Sbjct: 61  ALGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPE 120

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
              L  E++ TV   I  LP+DL+TA+TLRE DGLSYE+IA VM CPVGTVRSRIFRARE
Sbjct: 121 RALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRARE 180

Query: 181 AVEKKIKPLL 190
           A++K ++PLL
Sbjct: 181 AIDKALQPLL 190