Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 68.6 bits (166), Expect = 7e-17
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 37  ISRYVSNSGDVADVA-QEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPP 95
           ++R++     +AD A QEA+++A+R     RGESA   WL  I  N   + +  +  R  
Sbjct: 25  LARWLLRDDQLADDAVQEAYLRAFRFFDGLRGESA-RPWLLGIVRNACYDWM--RQNRQL 81

Query: 96  ASDVDAEEAEFYEGGDALK--ELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELD 153
           A  V+ +E    E   A    E  +P      +   + V  AIDALP   +  + LREL+
Sbjct: 82  ADQVEFDELRDSEAASAPSSPEAGDPARQWERRVQGERVNAAIDALPPVYREVIVLRELE 141

Query: 154 GLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKIK 187
            + YE+IA +   P+GTV SR+ RAR  + + ++
Sbjct: 142 EMRYEDIARIAGVPLGTVMSRLSRARAMLRESLR 175