Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score =  189 bits (480), Expect = 3e-53
 Identities = 96/189 (50%), Positives = 131/189 (69%), Gaps = 5/189 (2%)

Query: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66
           D  L++R   GD++AF LLV++YQ ++  LI R V +   + D+AQE FI+AYRA+  FR
Sbjct: 29  DFQLVQRTVAGDQKAFELLVIKYQRRIERLIGRMVRDVDLIEDIAQETFIRAYRALHQFR 88

Query: 67  GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDV-----DAEEAEFYEGGDALKELSNPEN 121
           GE+ FYTWLYRIAVNTAK  +V   R P  S+        +E E Y  G+       PE+
Sbjct: 89  GEAQFYTWLYRIAVNTAKKALVDMKRDPTVSEAALRPSSEDEDETYRPGNEPTTDETPES 148

Query: 122 ITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREA 181
           +  + E+ + V  A++ALP +L+ A+TLRE++G+SYEEIAEVMDCP+GTVRSRIFRAREA
Sbjct: 149 VLAANEIARAVEAAMEALPAELRQAVTLREIEGMSYEEIAEVMDCPIGTVRSRIFRAREA 208

Query: 182 VEKKIKPLL 190
           +  ++KPLL
Sbjct: 209 ISARVKPLL 217