Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 188 a.a., sigma-24 (FecI-like) protein from Sphingobium sp. HT1-2

 Score = 67.0 bits (162), Expect = 2e-16
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 4/182 (2%)

Query: 6   TDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTF 65
           +D  L      G + A+  LV R+Q  V  L+  +V +  +  DV Q +F+ A+ A+  +
Sbjct: 9   SDGELAALALGGRQAAYGELVRRHQGWVHRLVRSHVGSPDEALDVTQASFVAAFSALSRY 68

Query: 66  RGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLS 125
            G   F  W+ RI +N   +      RR    +  +      E    + +  + +    +
Sbjct: 69  DGTRPFPVWMSRIVINKCHDW----RRRRAVRNFFSFALPLGEAEHIVDDAPSADRALDA 124

Query: 126 KELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKK 185
           ++       AI ALP  LK  + LR +D  S  E AE++      V +R++RAR  + + 
Sbjct: 125 EQQLAEAMTAIAALPASLKDTLILRTIDEKSEAETAEILGISQKAVETRLYRARARLAES 184

Query: 186 IK 187
           +K
Sbjct: 185 LK 186