Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., RNA polymerase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 52/184 (28%), Positives = 96/184 (52%), Gaps = 11/184 (5%)

Query: 4   QLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIP 63
           Q  + ++IER ++G+ +A   L   Y   + N+  R  ++  +  DV QEAF+ A++ + 
Sbjct: 7   QDVNHLVIERCKSGEHRAQYELYKLYAKAMFNVSMRITNDYAEAEDVLQEAFVSAFKNLH 66

Query: 64  TFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENIT 123
           +++ E++F +WL +I VN A N I    R+  A  V  +E       D   E S+ E   
Sbjct: 67  SYKAEASFGSWLKKIVVNAAINAI----RKRRAELVPMDERLVAGVPD---EKSDDEPEW 119

Query: 124 LSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVE 183
             +++++    AI  LPD  +  ++L  L+G  + EI E++     T +S+  RAR+ + 
Sbjct: 120 QIEQVRR----AIQKLPDGYRLVLSLYLLEGYDHAEIGEILGISESTSKSQYSRARKKLL 175

Query: 184 KKIK 187
           + +K
Sbjct: 176 EIMK 179