Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 197 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 93.6 bits (231), Expect = 2e-24
 Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 14/194 (7%)

Query: 1   MNEQLTDQVLIERVQNGDKQA-FNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAY 59
           M+EQ   Q+  E     +K A F   +L   + + N   R   +  D  D+ QE ++KAY
Sbjct: 1   MSEQTGKQLSKE-----EKDARFEAELLPVLDPLYNFAYRLTLDEDDANDLVQETYLKAY 55

Query: 60  RAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFY------EGGDAL 113
           R    F   +    WL+RI  N+  N    +S++P  + VD  E E Y      EG   +
Sbjct: 56  RFFDYFEQGTNAKAWLFRILKNSFINEFRKKSKQP--AKVDYSEVEGYYNSEDVEGESGV 113

Query: 114 KELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRS 173
              ++    ++   +   V  A++ALP D +T + L +L+G +YEE+A+++D P+GTVRS
Sbjct: 114 ASTTDMRTESVQDLIGDEVASALNALPVDFRTVIILCDLEGFTYEEMAKILDIPIGTVRS 173

Query: 174 RIFRAREAVEKKIK 187
           R+ RAR ++++K++
Sbjct: 174 RLHRARNSLKEKLE 187