Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 179 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 88.6 bits (218), Expect = 6e-23
 Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 14/187 (7%)

Query: 5   LTDQVLIERVQNGDKQ--AFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAI 62
           + D+ L+E+    + +  AFN LV +YQ K+   I + V +  D  D+ QE F+K ++ +
Sbjct: 1   MEDKELLEKFAQPESRNMAFNQLVRKYQQKIYWHIRKMVIDHDDADDLTQEVFLKVWKNL 60

Query: 63  PTFRGESAFYTWLYRIAVNTAKNHIVAQSRR--PPASDVDAEEAEFYEGGDALKELSNPE 120
             FR ++  YTW+YRIA N   + + ++ RR   P +DV AE  E        K  S+P+
Sbjct: 61  DNFRQDAQLYTWIYRIATNECLSFLSSKKRRFFLPLNDVTAELME--------KVASSPD 112

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
                 E+++ +  AI  LPD  +    ++  D + YEE+++++   VG +++    A +
Sbjct: 113 --LAGDEVQQKLQKAILRLPDKQRLVFNMKYFDEMKYEEMSQILGTSVGALKASYHIAVK 170

Query: 181 AVEKKIK 187
            VE+ +K
Sbjct: 171 KVEEFLK 177