Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 90.1 bits (222), Expect = 2e-23
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 11/180 (6%)

Query: 14  VQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYT 73
           V+  D++A+  L+  Y+  V +++ + V N+ D  D+  EAF KA++ +  F  E AF T
Sbjct: 22  VEENDEKAYAELMSIYKKPVYHVVLKMVRNADDAEDLTIEAFAKAFKNLHKFNPEYAFST 81

Query: 74  WLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDAL------KELSNPENITLSKE 127
           WL+RIA N   + I    R+     +  + A   + GD +      K L NP+   +  +
Sbjct: 82  WLFRIATNNCIDFI----RKNRIKTMSIDSAIKIDNGDEITIDFKDKNL-NPQEEAIKNQ 136

Query: 128 LKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKIK 187
             + +   +  LP+  +  +TLR  + LSYEEIA  ++ P+GTV++++ RARE +   +K
Sbjct: 137 KIEIMQYVVAKLPEKYQRLVTLRYFNELSYEEIATELNAPLGTVKAQLHRARELLYDMVK 196