Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase, sigma 24 (sigma E) factor (NCBI) from Escherichia coli BW25113

 Score =  286 bits (731), Expect = 2e-82
 Identities = 140/190 (73%), Positives = 171/190 (90%), Gaps = 1/190 (0%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+EQLTDQVL+ERVQ GD++AFNLLV+RYQ+KV +L+SRYV  SGDV DV QEAFIKAYR
Sbjct: 1   MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYR 59

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+ +FRG+SAFYTWLYRIAVNTAKN++VAQ RRPP+SDVDA EAE +E G ALKE+SNPE
Sbjct: 60  ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
           N+ LS+EL++ VF  I++LP+DL+ A+TLRELDGLSYEEIA +MDCPVGTVRSRIFRARE
Sbjct: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179

Query: 181 AVEKKIKPLL 190
           A++ K++PL+
Sbjct: 180 AIDNKVQPLI 189