Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 72.4 bits (176), Expect = 5e-18
 Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 5   LTDQVLIERV-QNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIP 63
           L D  LIE+V +N D + F +L  RY N V N    +V +  +  D+  + FIK +  + 
Sbjct: 17  LEDIQLIEQVVKNNDSKLFGILYDRYSNIVYNKCLSFVKSKDEAQDLTHDIFIKLFFQLK 76

Query: 64  TFRGESAFYTWLYRIAVNTAKNHIVA--QSRRPPASDVDAEEAEFYEGGDALKELSNPEN 121
            F+G++ F TWLY    N   N++    Q ++     +D  +   YE      E+ + E 
Sbjct: 77  KFKGDAKFSTWLYSFTYNFCVNYVQRKYQKKKETFQRLDDLQHHPYE------EIDDSEI 130

Query: 122 ITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
             +  E  +    ++D  P+D K  + ++ +DG+S++EI + +      V+ RI RA++
Sbjct: 131 YKMQAERLQRSLQSLD--PND-KMVLLMKYMDGMSHKEIQQSIGVGESAVKMRINRAKQ 186