Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 74.7 bits (182), Expect = 9e-19
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 5   LTDQVLIERVQNGD--KQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAI 62
           L D  L++ + N    ++ + +LV  YQ ++ ++I + V    D  D+ Q  F+KA++ I
Sbjct: 4   LDDTSLLKLINNPQTREKGYRMLVNHYQKRIYSIIRKMVIIHEDADDLVQNTFVKAFKNI 63

Query: 63  PTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGG--DALKELSNPE 120
             F+ +S+ +TWLYRIA+N   N +  + +R   +    E+ E    G  D+   +   E
Sbjct: 64  NNFKRDSSLFTWLYRIAINECLNFLEKKKKR---NFFRLEDHEHKMAGYLDSTLHIEGDE 120

Query: 121 -NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179
             + L K L K        LP   +    ++  + LSY +I+E+     G +++    A 
Sbjct: 121 IQLLLQKLLLK--------LPKKQRLVFNMKYFENLSYAQISEITKTSEGALKASYHHAV 172

Query: 180 EAVEKKIKP 188
           + +E +I P
Sbjct: 173 KKIENEINP 181