Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 203 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 92.0 bits (227), Expect = 6e-24
 Identities = 57/185 (30%), Positives = 102/185 (55%), Gaps = 10/185 (5%)

Query: 2   NEQLTDQVLIER-VQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           ++ L D  LI++ V   D+QA+  L+ RY+  V  +I + + ++ D  D+  EAF KA+R
Sbjct: 10  DKALEDFDLIDQAVDQKDQQAYATLMKRYKKAVYFMILKMIRDADDAEDLTMEAFAKAFR 69

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALK-----E 115
            +  F+ +  F TWL+RIA N   + I    R+     +        +GG+++      +
Sbjct: 70  NLHKFKKDYTFSTWLFRIATNNTIDFI----RKKKLKTMSLNNTLTDDGGNSVNIDVEDD 125

Query: 116 LSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRI 175
            +NP++  +  +  + V   +D LP   +  + LR  D LSY+EIA+ +D P+GTV++++
Sbjct: 126 DNNPQDEFIKSQRIEMVRIFVDKLPAKYRKLVKLRYFDELSYDEIAQELDKPLGTVKAQL 185

Query: 176 FRARE 180
            R+RE
Sbjct: 186 HRSRE 190