Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 200 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 74.7 bits (182), Expect = 1e-18
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPT-- 64
           D  LI + +NG + AF +LV +Y+++V   I   V + G   D+ Q+ F+K  + + +  
Sbjct: 9   DSELIAQYRNGSEAAFEVLVDKYKSRVFTTIYMIVKDQGLAEDLLQDVFVKVIQTLNSDR 68

Query: 65  FRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKEL----SNPE 120
           +  E  F  WL RIA N A ++     R P     D        G +    L    SN E
Sbjct: 69  YNEEGKFQPWLMRIAHNLAVDYFRKMKRYPFIMMED--------GSNLFNTLKFADSNVE 120

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
           +  +  E    V D ID LP+  K  + +R    LS++EIA+     + T   R+  A  
Sbjct: 121 DQQVKDETHALVRDLIDELPESQKQVLIMRHYMDLSFQEIADQTGVSINTALGRMRYALI 180

Query: 181 AVEKKIKPL 189
            + KK+K +
Sbjct: 181 NMRKKLKQI 189