Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 44/183 (24%), Positives = 91/183 (49%), Gaps = 12/183 (6%)

Query: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66
           DQ LI+  ++G  +A  +L   +     ++  RY ++  +  ++  ++F+KA+  I  + 
Sbjct: 2   DQYLIQEAKDGKPKALEMLYKHFYGYAMSVSLRYSNSREEACEIVNDSFMKAFDRIHQYS 61

Query: 67  GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLSK 126
             S+F  W  RI +NT+ ++     +     +++   A+ Y+    + ELS         
Sbjct: 62  ENSSFKAWFRRIVINTSIDYYRKHVKHYAVMEIEKASAKTYD-ASIIDELS--------- 111

Query: 127 ELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186
             K  + DA+  LP+ ++    + E++G ++ EI E +D P  T R+ + RA++ + +KI
Sbjct: 112 --KADILDALRDLPEVMRIIFNMYEIEGYNHNEIGESLDIPASTSRTYLARAKQRLREKI 169

Query: 187 KPL 189
             L
Sbjct: 170 TEL 172