Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 94.0 bits (232), Expect = 2e-24
 Identities = 54/181 (29%), Positives = 104/181 (57%), Gaps = 7/181 (3%)

Query: 11  IERVQNGDKQAFNLL---VLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRG 67
           +++ +  DK+  N+     + + + + N   R   +  D  D+ Q+ ++KAYR I +F  
Sbjct: 4   VQKKKYSDKEKNNIFDHEFMPHIDSMYNFAFRLTFDEDDAKDLVQDTYLKAYRFINSFEQ 63

Query: 68  ESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALK-ELSNPENITLSK 126
            +    WL+RI  N+  N    +S++P  S VD +E E Y   D++   +++   +   K
Sbjct: 64  GTNAKAWLFRILKNSFINEYRKKSKQP--SKVDYQEVETYYNSDSVDYNITSDLRVDAVK 121

Query: 127 E-LKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKK 185
           + L   + +A+++L  D +T + L +L+G +YEE+A+++D P+GTVRSR+ RAR  +++K
Sbjct: 122 DMLGDEISNALNSLAVDFRTVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRARNLLKEK 181

Query: 186 I 186
           +
Sbjct: 182 L 182