Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., sigma-70 family RNA polymerase sigma factor from Bacteroides stercoris CC31F

 Score = 73.2 bits (178), Expect = 3e-18
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 19/184 (10%)

Query: 5   LTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVAD-VAQEAFIKAYRAIP 63
           L  QV++ R    + +AF+ LV +YQ+ V            +++D +AQ+ FIKAY  + 
Sbjct: 9   LVAQVVVFR----NTRAFDRLVGKYQSSVRRFFLHLTCGDSELSDDLAQDTFIKAYTNLS 64

Query: 64  TFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENIT 123
           +F+  S+F TWLYRIA N   +++  +        +  +     +  D  + +       
Sbjct: 65  SFKNLSSFSTWLYRIAYNVFYDYLRTRKETDSLETLRVDAQYSTQQNDIGRHMD------ 118

Query: 124 LSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVE 183
                   ++ A++ L +  +T +TL  ++  S E+IA++   P GTV+S + RA+E + 
Sbjct: 119 --------IYRALNMLKETERTCITLFYMEDQSIEKIADITGYPTGTVKSHLSRAKEKMA 170

Query: 184 KKIK 187
             +K
Sbjct: 171 TYLK 174